Regional Scientific Meetings
Gene and Gene Product Databases
NCBI (National Center
for Biotechnology Information, a branch of NIH)
Entrez
(Genbank, the main repository for genetic information; this is a
part of the NCBI)
TIGR Database (The Institute
for Genomic Research, a genome sequencing company)
Uniprot (EMBL database of
protein sequences)
The
Human Genome Project
(The organization coordinating the sequencing of the human genome)
Genome Web
(List of gene databases)
BLAST server
(Sequence alignment and search server at NCBI)
Center for Genome Research
(Whitehead Institute at MIT)
RNA
Modification Database (database of modifications to RNA
bases)
The Complete Human Genome
Science
Special issue on the human genome
Nature
Special issue on the human genome
Human Genome Project
(U.S. Department of Energy website covering the genome sequencing
effort; note that the actual sequence information is deposited in
Genbank)
Cracking the code
(PBS NOVA program on the genome project)
Gene and Gene Product Analysis
NCBI (National Center
for Biotechnology Information)
ORF finder
(NCBI server for finding open reading frames)
Protein
Databank (Repository of protein 3D structural information)
Guide to Molecular
Sequence Analysis (Guide to bioinformatics nomenclature and
techniques)
BLAST server (sequence alignment and search)
ExPASy Molecular Biology Server
(Server that contains a variety of molecular biology tools,
including translation of nucleic acids, similarity searches and
alignments, and secondary and tertiary structure prediction)
Serial
Cloner (Macintosh/Windows program for performing
restriction and other types of analysis on DNA sequences)
tacg This is a
website that performs restriction analysis of DNA sequences. It
is less convenient than programs like DNA Strider, but it runs
on both PCs and Macs.
Webcutter
(Server that performs DNA restriction enzyme analysis)
NEBcutter
(Server that performs DNA restriction enzyme and ORF analysis)
tacg
alternate This is a version of the tacg program located on
a computer at CSU Fullerton.
Swiss-Model (Automated homology
modeling server)
k2d (Server for predicting
secondary structure content from CD data)
Gene Almanac (Cold Spring
Harbor Laboratory tutorials and resources)
DNA Learning Center
(Cold Spring Harbor Laboratory analysis tools and resources)
SAGE (Serial
Analysis of Gene Expression, run by NCBI)
GEO (Proposal for
database of gene expression data)*
ArrayExpress
(Pilot database of microarray gene expression data)
WIT "What Is There", a
site devoted to analysis of genome information and development of
metabolic models (note: registration required)
RNA Secondary
Structure Prediction Server (RNA structure prediction and
information page)
Pedro's
Biomolecular Research Tools (List of sites with useful
information and services)*
Online
Mendelian Inheritance in Man (Database of genes and genetic
diseases)*
Genomics Glossary
(Compendium of terms used in biotechnology and pharmacology)
Genome Sequencer
System (Movie describing the technology for automated large
scale sequencing)
Comparative Toxicogenomics
Database (database of environmental chemicals and disease)
DNA Array and Microarray Technology
Viruses
Scientific Journals (Note: some of
these sites restrict information available to non-subscribers)
Science
Nature
Journal of Biological Chemistry
Proceedings of the National
Academy of Sciences
New England Journal of Medicine
The Lancet
BioMedNet (Community
of Biological and Medical Researchers; registration required)
Science Virtual Library
(Compendium of science oriented websites)
Biotechnology Sites
NBIF
(National Biotechnology Information Facility)
Council for Biotechology
Information (A biotechology news and information website)
PhRMA (A news and information
website run by a pharmaceutical lobbying group)
Genetic Trail
(Howard Hughes Research Institute site discussing genetic
disorders)
Human
Genetics Education Resource (A compendium of links to
different university genetics websites)
Food Biotechnology
(International Food Information Council)
OBA (Office of
Biotechnology Activities at the NIH)
Biospace ("The Global
Hubsite for Life Sciences")
ISB (Information Systems
for Biotechnology)
Molecular
Biology Resources Online (a compendium of history and
techniques links related to molecular biology)
NCBE
(Guide on genetically modified foods run by a site in the United
Kingdom)
Global
Issues in Biotechnology (US Government site for addressing
biotechnology issues)
Genome Channel
(Annotated genome information; Note: requires recent version of
Java)
BIO (Biotechnology
Industry Organization)
REBASE (Database of
available restriction endonucleases)
BioProcess
(Amersham website containing information and techniques related to
protein purification)
Protocol Online (A
compendium of protocols for biochemistry laboratory techniques)
Biotechnology Corporate Websites
Environment
and Sustainability Related Sites
Chemistry Websites
EPA (Environmental Protection
Agency)
FDA (Food and Drug
Administration)
Haz-Map (Toxicological
information database at the National Library of Medicine at NIH)
ATSDR
(Toxicological profies from the Agency for Toxic Substances
& Disease Registry at CDC)
The Screaming Gummy Bear video
Explosions
Utilities
Acrobat
Reader
Download site
Rasmol (3D molecular visualization software)
Swiss-PDB
viewer (3D Protein graphics viewer and manipulation
software)
VMD (3D
molecular visualization and manipulation software)
Accelrys Draw (Formerly Symyx
Draw; Free chemistry drawing program from Accelrys)
ChemSketch (Free
chemistry drawing program from Advanced Chemistry Development)
Webmol
(Java-based 3D molecular visualization software)
Gepasi (Metabolic Control
Analysis biochemical pathway simulation software)
Copasi (Complex
Pathway Simulator software)
Serial
Cloner (Program for performing restriction and other types
of analysis on DNA sequences)
Molecular
Biology Software (a variety of downloadable programs)
Statpages (John
Pezzullo's statistical software compendium)
Miscellaneous
Computer
Related
Copyright 2002-2013 © Mark
Brandt, Ph.D.
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